Free Access
Issue
Lait
Volume 81, Number 1-2, January-April 2001
10th Meeting of the " Club des Bactéries Lactiques ".
Page(s) 237 - 248
DOI https://doi.org/10.1051/lait:2001127

References

1
Amann R.I., In situ identification of micro-organisms by whole cell hybridization with rRNA-targeted nucleic acid probes, Mol. Microbial Ecol. Manual 3.3.6., 1995, pp. 1-15.
2
Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., Stahl D.A., Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations, Appl. Environ. Microbiol. 56 (1990) 1919-1925.
3
Amann R.I., Zarda B., Stahl D.A., Schleifer K.-H., Identification of individual prokaryotic cells by using enzyme-labeled, rRNA-targeted oligonucleotide probes, Appl. Environ. Microbiol. 58 (1992) 3007-3011.
4
Amann R.I., Ludwig W., Schleifer K.-H., Phylogenetic identification and in situ detection of individual microbial cells without cultivation, Microbiol. Rev. 59 (1995) 143-169.
5
Beimfohr C., Krause A., Amann R., Ludwig W., Schleifer K.-H., In situ identification of Lactococci, Enterococci and Streptococci, Syst. Appl. Microbiol. 16 (1993) 450-456.
6
Benson D.A., Boguski M.S., Lipman D.J., Ostell J., Francis Ouellette B.F., Rapp B.A., Wheeler D.L., GenBank, Nucleic Acids Res. 27 (1999) 12-17.
7
Buchardt O., Egholm M., Nielsen P.E., Berg R.H., Peptide nucleic acids, PCT patent WO 92/20702, 1992.
8
Buchardt O., Egholm M., Nielsen P.E., Berg R.H., The use of nucleic acid analogues in diagnostics and analytical procedures, PCT patent WO 92/20703, 1992.
9
de Long E.F., Wickham G.S., Pace N.R., Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells, Science 243 (1989) 1360-1363.
10
de Man J.C., Rogosa M., Sharpe M.E., A medium for the cultivation of lactobacilli, J. Appl. Bacteriol. 23 (1960) 130-135.
11
Egholm M., Buchardt O., Christensen L., Behrens C., Freier S.M., Driver D.A., Berg R.H., Kim S.K., Norden B., Nielsen P.E., PNA hybridizes to complementary oligonucleotides obeying the Watson-Crick hydrogen-bonding rules, Nature 365 (1993) 566-568.
12
Hahn D., Amann R.I., Zeyer J., Detection of mRNA in Streptomyces cells by whole-cell hybridization with digoxigenin-labeled probes, Appl. Environ. Microbiol. 59 (1993) 2753-2757.
13
Hobbie J.E., Daley R.J., Jasper S., Use of nucleopore filters for counting bacteria by fluorescence microscopy, Appl. Environ. Microbiol. 33 (1977) 1225-1228.
14
Hodson R.E., Dustman W.A., Garg R.P., Moran M.A., In situ PCR for visualization of microscale distribution of specific genes and gene products in prokaryotic communities, Appl. Environ. Microbiol. 61 (1995) 4074-4082.
15
Jacobs D., Angles M.L., Goodman A.E., Neilan B.A., Improved methods for in situ enzymatic amplification and detection of low copy number genes in bacteria, FEMS Microbiol. Lett. 152 (1997) 65-73.
16
Kemp P.F., Lee S., Laroche J., Estimating the growth rate of slowly growing marine bacteria from RNA content, Appl. Environ. Microbiol. 59 (1993) 2594-2601.
17
Lebaron P., Catala P., Fajon C., Joux F., Baudart J., Bernard L., A new sensitive, whole-cell hybridization technique for detection of bacteria involving a biotinylated oligonucleotide probe targeting rRNA and tyramide signal amplification, Appl. Environ. Microbiol. 63 (1997) 3274-3278.
18
Ludwig W., Schleifer K.H., Bacterial phylogeny based on 16S and 23S rRNA sequence analysis, FEMS Microbiol. Rev. 15 (1994) 155-173.
19
Maidak B.L., Cole J.R., Parker C.T. Jr., Garrity G.M., Larsen N., Li B., Lilburn T.G., McCaughey M.J., Olsen G.J., Overbeek R., Pramanik S., Schmidt T.M., Tiedje J.M., Woese C.R., A new version of RDP (Ribosomal Database Project), Nucleic Acids Res. 27 (1999) 171-173.
20
Martinez-Murcia A.J., Collins M.D., A phylogenetic analysis of an atypical leuconostoc: description of Leuconostoc fallax sp. nov., FEMS Microbiol. Lett. 82 (1991) 55-60.
21
Pettipher G.L., Watts Y.B., Langford S.A., Kroll R.G., Preliminary evaluation of COBRA, an automated DEFT instrument, for rapid enumeration of micro-organisms in cultures, raw milk, meat and fish, Lett. Appl. Microbiol. 14 (1992) 206-209.
22
Prescott A.M., Fricker C.R., Use of PNA oligonucleotides for in situ detection of Escherichia coli in water, Mol. Cell Probes 13 (1999) 261-268.
23
Sch"onhuber W., Fuchs B., Juretschko S., Amann R., Improved sensitivity of whole-cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification, Appl. Environ. Microbiol. 63 (1997) 3268-3273.
24
Stackebrandt E., Goebel B.M., Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology, Int. J. Syst. Bacteriol. 44 (1994) 846-849.
25
Tani K., Kurokawa K., Nasu M., Development of a direct in situ PCR method for detection of specific bacteria in natural environments, Appl. Environ. Microbiol. 64 (1998) 1536-1540.
26
Terzaghi B.E., Sandine W.E., Improved medium for lactic streptococci and their bacteriophages, Appl. Microbiol. 29 (1975) 807-813.
27
Thisted M., Just T., Pluzek K.-J., Petersen K.H., Hyldig-Nielsen J.J., Godtfredsen S.E., Detection of immunoglobulin kappa light chain mRNA in paraffin sections by in situ hybridization using peptide nucleic acid probes, Cell Vis. 3 (1996) 358-363.
28
Tolker-Nielsen T, Halberg Larsen M., Kyed H., Molin S., Effects of stress treatments on the detection of Salmonella typhimurium by in situ hybridization, Int. J. Food Microbiol. 35 (1997) 251-258.
29
Woese C.R., Bacterial evolution, Microbiol. Rev. 51 (1987) 221-271.
30
Yamaguchi N., Inaoka S., Tani K., Kenzara T., Nasu M., Detection of specific bacterial cells with 2-hydroxy-3-naphthoic acid-2'-phenylanilide phosphate and fast red TR in situ hybridization, Appl. Environ. Microbiol. 62 (1996) 275-278.

Abstract

Copyright INRA, EDP Sciences