A mini review: proteomic analysis, a post-genomic approach

Free Access

Issue		Lait Volume 81, Number 1-2, January-April 2001 10^th Meeting of the " Club des Bactéries Lactiques ".


Page(s)		13 - 18
DOI		https://doi.org/10.1051/lait:2001108

References

1: Blackstock W.P., Weir M.P., Proteomics: quantitative and physical mapping of cellular proteins, Trends Biotech. 17 (1999) 121-127.
2: Cash P., Argo E., Ford L., Lawrie L., McKenzie H., A proteomic analysis of erythromicin resistance in Streptococcus pneumoniae, Electrophoresis 20 (1999) 2259-2268.
3: Fey S.J., Nawrocki A., Larsen M., Görg A., Roepstorff P., Skews G.N., Williams R., Larsen M.P., Proteome analysis of Saccharomyces cerevisiae: a methodological outline, Electrophoresis 18 (1997) 1361-1372.
4: Fleischmann R.D., Adams M.D., White O., Clayton R.A., Kirkness E.F., Kerlavage A.R., Bult C.J., Tomb J.F., Dougherty B.A., Merrick J.M., McKenney K., Sutton G., Fitz-Hugh W., Fields C., Gocayne J.D., Scott J., Shirley R., Liu L., Glodex A., Kelley J.M., Weidmen J.F., Phillips C.A., Spriggs T., Hedblom E., Cotton M.D., Utterback T.R., Hanna M.C., Nguyen D.T., Saudek D.M., Brandon R.C., Fritchmann J.L., Fuhrmann J., Geoghagen N.S.M., Gnehm C.L., McDonald L.A., Small K.V., Fraser C.M., Smith H.O., Venter J.C., Whole-genome random sequencing and assembly of Haemophilus influenzae Rd, Science 269 (1995) 496-512.
5: Gygi S.P., Rochon Y., Franza B.R., Aebersold R., Correlation between protein and mRNA abundance in yeast, Mol. Cell. Biol. 19 (1999) 1720-1730.
6: Hartke A., Bouché S., Giard J.-C., Benachour A., Boutibonnes P., Auffray Y., The lactic acid stress response of Lactococcus lactis subsp. lactis, Curr. Microbiol. 33 (1996) 194-199.
7: Haynes P.A., Gygi S.P., Figeys D., Aebersold R., Proteome analysis: Biological assay or data archive?, Electrophoresis 19 (1998) 1862-1871.
8: Henzel W.J., Billeci T.M., Stults J.T., Wong S.C., Grimley C., Watanabe C., Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases, Proc. Natl. Acad. Sci. USA 90 (1993) 5011-5015.
9: Hermann T., Wersh G., Uhlemann E.M., Schmid R., Burdovski A., Mapping and identification of Corynebacterium glutamicum proteins by two-dimensional gel electrophoresis and microsequencing, Electrophoresis 19 (1998) 3217-3221.
10: Humphery-Smith I., Cordwell S.J., Blackstock W.P., Proteome research: complementarity and limitations with respect to the RNA and DNA worlds, Electrophoresis 18 (1997) 1217-1242.
11: Hunt D.F., Buko A.M., Ballard J.M., Shabanowitz J., Giordani A.B., Sequence analysis of polypeptides by collision activated dissociation on a triple quadrupole mass spectrometer, Biomed. Mass Spectrom. 8 (1981) 397-408.
12: Neubauer G., Mann M., Mapping of phosphorylation sites of gel-isolated proteins by nanoelectrospray tandem mass spectrometry: potentials and limitations, Anal. Chem. 71 (1999) 235-242.
13: O'Farrell P.H., High resolution two-dimensional electrophoresis of proteins, J. Biol. Chem. 250 (1975) 4007-4021.
14: Quadroni M., James P., Dainese-Hatt P., Kertesz M.A., Analysis of global responses by protein and peptide fingerprinting of proteins isolated by two-dimensional gel electrophoresis. Application to the sulfate-starvation response of Escherichia coli, Eur. J. Biochem. 266 (1999) 986-996.
15: Rabilloud T., Adessi C., Giraudel A., Lunardi J., Improvement of the solubilization of proteins in two-dimensional electrophoresis with immobilized pH gradients, Electrophoresis 18 (1997) 307-316.
16: Shevchenko A., Wilm M., Vorm O., Mann M., Mass spectrometric sequencing of proteins from silver-stained polyacrylamide gels, Anal. Chem. 68 (1996) 850-858.
17: Spengler B., Kirsch D., Kaufmann R., Jaeger E., Peptide sequencing by matrix-assisted laser-desorption mass spectrometry, Rapid Commun. Mass Spectrom. 6 (1992) 105-108.
18: Steinberg T.H., Haugland R.P., Singer V.L., Applications of SYPRO orange and SYPRO red protein gel stains, Anal. Biochem. 239 (1996) 238-245.
19: Tomb J.F., A panoramic view of bacterial transcription, Nat. Biotechnol. 16 (1998) 23.
20: van Bogelen R.A., Schiller E.E., Thomas J.D., Neidhardt F.C., Diagnosis of cellular states of microbial organisms using proteomics, Electrophoresis 20 (1999) 2149-2159.
21: Velculescu V.E., Zhang L., Zhou W., Vogelstein J., Basrai M.A., Bassett D.E. Jr., Hieter P., Vogelstein B., Kinzler K.W., Characterization of the yeast transcriptome, Cell 24 (1997) 243-251.
22: Wasinger V.C., Cordwell S.J., Cerpa-Poljak A., Yan J.X., Gooley A.A., Wilkins M.R., Duncan M.W., Harris R., Williams K.L., Humphery-Smith I., Progress with gene-product of the Mollicutes: Mycoplasma genitalium, Electrophoresis 16 (1995) 1090-1094.
23: Wise M.J., Littlejohn T.G., Humphery-Smith I., Peptide-mass fingerprinting and the ideal covering set for protein characterisation, Electrophoresis 18 (1997) 1399-1409.
24: Yates III J.R., Mass spectrometry and the age of the proteome, J. Mass Spectrom. 33 (1998) 1-19.

Abstract